| N_sites | N_counts | N_detections | rep_period | iterations | burnin | thin |
|---|---|---|---|---|---|---|
| 127 | 437 | 72 | 7 days | 120000 | 20000 | 10 |
| Yr | 2016 | 2017 | 2018 | 2019 | 2020 |
| sites | 19 | 31 | 19 | 32 | 26 |
| detections | 10 | 56 | 3 | 0 | 3 |
| N.dot.model | 5 | 16 | 2 | 0 | 2 |
| model | description | WAIC | N.total.est |
|---|---|---|---|
| fm7 | counts | 13.94475 | 54 |
| fm5 | jdt + jdtSq | 315.37097 | 39 |
| fm6 | lure + jdt + jdtSq | 316.37138 | 39 |
| fm2 | jdt | 324.57210 | 38 |
| fm4 | lure + jdt | 326.28625 | 39 |
| fm1 | dot | 423.41197 | 25 |
| fm3 | lure | 427.11536 | 30 |
| param | covariate | iters_ef | mean | mode | hdi_89pct_lower | hdi_89pct_upper | bayes_P | pct.density |
|---|---|---|---|---|---|---|---|---|
| p[1] | NA | 6209 | 0.097 | 0.084 | 0.04 | 0.16 | 0 | 1.0008 |
| p[2] | NA | 5130 | 0.130 | 0.129 | 0.09 | 0.17 | 0 | 1.001 |
| p[3] | NA | 4800 | 0.039 | 0.023 | 0.00 | 0.07 | 0 | 0.994 |
| p[4] | NA | 9978 | 0.483 | 0.142 | 0.00 | 0.88 | 0 | 0.9829 |
| p[5] | NA | 4589 | 0.034 | 0.021 | 0.00 | 0.06 | 0 | 0.9931 |
| lambda[1] | NA | 3566 | 0.318 | 0.221 | 0.07 | 0.54 | 0 | 1.0006 |
| lambda[2] | NA | 6793 | 0.637 | 0.583 | 0.33 | 0.92 | 0 | 1.001 |
| lambda[3] | NA | 1613 | 0.224 | 0.068 | 0.00 | 0.41 | 0 | 0.9871 |
| lambda[4] | NA | 7897 | 0.000 | err | 0.00 | 0.00 | err | err |
| lambda[5] | NA | 1599 | 0.201 | 0.057 | 0.00 | 0.39 | 0 | 0.988 |
| N[68] | NA | 2494 | 0.112 | err | 0.00 | 0.00 | err | err |
| N[119] | NA | 3596 | 0.144 | err | 0.00 | 1.00 | err | err |
| N[37] | NA | 8671 | 1.055 | err | 1.00 | 1.00 | err | err |
| N[9] | NA | 4296 | 0.072 | err | 0.00 | 0.00 | err | err |
| N[81] | NA | 0 | 0.000 | err | 0.00 | 0.00 | err | err |
## Warning in cor(X, use = "pairwise.complete.obs"): the standard deviation is zero
## Warning: Removed 50 rows containing missing values (geom_bar).
| param | covariate | iters_ef | mean | mode | hdi_89pct_lower | hdi_89pct_upper | bayes_P | pct.density |
|---|---|---|---|---|---|---|---|---|
| alpha | jdt | 2005 | 2.069 | 2.075 | 1.60 | 2.51 | 0 | 1.001 |
| alpha0 | NA | 1890 | -3.991 | -3.949 | -4.54 | -3.38 | 0 | 1.001 |
| lambda[1] | NA | 8461 | 0.326 | 0.23 | 0.08 | 0.54 | 0 | 1.0008 |
| lambda[2] | NA | 8231 | 0.969 | 0.866 | 0.55 | 1.37 | 0 | 1.001 |
| lambda[3] | NA | 9042 | 0.145 | 0.076 | 0.00 | 0.28 | 0 | 0.9939 |
| lambda[4] | NA | 10000 | 0.000 | err | 0.00 | 0.00 | err | err |
| lambda[5] | NA | 10000 | 0.116 | 0.05 | 0.01 | 0.22 | 0 | 0.9939 |
| N[38] | NA | 9522 | 0.913 | 0 | 0.00 | 2.00 | 1 | err |
| N[68] | NA | 7712 | 0.034 | err | 0.00 | 0.00 | err | err |
| N[16] | NA | 9610 | 0.075 | err | 0.00 | 0.00 | err | err |
| N[91] | NA | 0 | 0.000 | err | 0.00 | 0.00 | err | err |
| N[15] | NA | 10000 | 0.056 | err | 0.00 | 0.00 | err | err |
## Warning in cor(X, use = "pairwise.complete.obs"): the standard deviation is zero
## Warning: Removed 50 rows containing missing values (geom_bar).
| param | covariate | iters_ef | mean | mode | hdi_89pct_lower | hdi_89pct_upper | bayes_P | pct.density |
|---|---|---|---|---|---|---|---|---|
| alpha | lure | 9106 | 0.179 | 0.196 | -0.04 | 0.41 | 0.42161 | 0.8983 |
| alpha0 | NA | 4026 | -2.477 | -2.423 | -2.83 | -2.12 | 0 | 1.001 |
| lambda[1] | NA | 8326 | 0.346 | 0.255 | 0.09 | 0.58 | 0 | 1.0008 |
| lambda[2] | NA | 5292 | 0.986 | 0.908 | 0.52 | 1.41 | 0 | 1.001 |
| lambda[3] | NA | 10000 | 0.116 | 0.056 | 0.01 | 0.22 | 0 | 0.9939 |
| lambda[4] | NA | 10000 | 0.000 | err | 0.00 | 0.00 | err | err |
| lambda[5] | NA | 10000 | 0.091 | 0.046 | 0.00 | 0.17 | 0 | 0.9935 |
| N[55] | NA | 10000 | 0.005 | err | 0.00 | 0.00 | err | err |
| N[68] | NA | 9844 | 0.008 | err | 0.00 | 0.00 | err | err |
| N[106] | NA | 10000 | 0.065 | err | 0.00 | 0.00 | err | err |
| N[50] | NA | 8965 | 0.043 | err | 0.00 | 0.00 | err | err |
| N[116] | NA | 9698 | 0.032 | err | 0.00 | 0.00 | err | err |
| param | covariate | iters_ef | mean | mode | hdi_89pct_lower | hdi_89pct_upper | bayes_P | pct.density |
|---|---|---|---|---|---|---|---|---|
| alpha[1] | lureDays | 6764 | -0.074 | -0.096 | -0.34 | 0.20 | 0.85684 | 0.6755 |
| alpha[2] | julianDt | 2000 | 2.073 | 2.051 | 1.62 | 2.50 | 0 | 1.001 |
| alpha0 | NA | 1764 | -4.019 | -3.977 | -4.60 | -3.44 | 0 | 1.001 |
| lambda[1] | NA | 8807 | 0.323 | 0.236 | 0.08 | 0.55 | 0 | 1.0009 |
| lambda[2] | NA | 8112 | 0.987 | 0.95 | 0.55 | 1.39 | 0 | 1.001 |
| lambda[3] | NA | 10000 | 0.146 | 0.065 | 0.00 | 0.28 | 0 | 0.9938 |
| lambda[4] | NA | 10000 | 0.000 | err | 0.00 | 0.00 | err | err |
| lambda[5] | NA | 8183 | 0.130 | 0.054 | 0.00 | 0.25 | 0 | 0.9936 |
| N[81] | NA | 0 | 0.000 | err | 0.00 | 0.00 | err | err |
| N[59] | NA | 9292 | 0.037 | err | 0.00 | 0.00 | err | err |
| N[30] | NA | 10000 | 1.036 | err | 1.00 | 1.00 | err | err |
| N[56] | NA | 10000 | 0.032 | err | 0.00 | 0.00 | err | err |
| N[13] | NA | 9707 | 1.053 | err | 1.00 | 1.00 | err | err |
## Warning in cor(X, use = "pairwise.complete.obs"): the standard deviation is zero
## Warning: Removed 50 rows containing missing values (geom_bar).
| param | covariate | iters_ef | mean | mode | hdi_89pct_lower | hdi_89pct_upper | bayes_P | pct.density |
|---|---|---|---|---|---|---|---|---|
| alpha[1] | julianDt | 66 | 5.611 | 5.04 | 3.25 | 8.22 | 0 | 1.001 |
| alpha[2] | julianDtSq | 72 | -1.779 | -1.598 | -2.92 | -0.66 | 0.02373 | 0.9992 |
| alpha0 | NA | 73 | -5.853 | -5.551 | -7.37 | -4.24 | 0 | 1.001 |
| lambda[1] | NA | 9585 | 0.313 | 0.241 | 0.08 | 0.53 | 0 | 1.0008 |
| lambda[2] | NA | 6519 | 1.067 | 0.95 | 0.58 | 1.54 | 0 | 1.001 |
| lambda[3] | NA | 10238 | 0.142 | 0.076 | 0.00 | 0.27 | 0 | 0.9927 |
| lambda[4] | NA | 10000 | 0.000 | err | 0.00 | 0.00 | err | err |
| lambda[5] | NA | 9414 | 0.114 | 0.063 | 0.00 | 0.22 | 0 | 0.9934 |
| N[125] | NA | 10595 | 0.114 | err | 0.00 | 0.00 | err | err |
| N[72] | NA | 0 | 0.000 | err | 0.00 | 0.00 | err | err |
| N[127] | NA | 10000 | 0.035 | err | 0.00 | 0.00 | err | err |
| N[4] | NA | 10291 | 1.056 | err | 1.00 | 1.00 | err | err |
| N[93] | NA | 0 | 0.000 | err | 0.00 | 0.00 | err | err |
## Warning in cor(X, use = "pairwise.complete.obs"): the standard deviation is zero
## Warning: Removed 50 rows containing missing values (geom_bar).
## Warning in cor(X, use = "pairwise.complete.obs"): the standard deviation is zero
## Warning: Removed 50 rows containing missing values (geom_bar).
| param | covariate | iters_ef | mean | mode | hdi_89pct_lower | hdi_89pct_upper | bayes_P | pct.density |
|---|---|---|---|---|---|---|---|---|
| alpha[1] | lureDays | 5902 | -0.023 | -0.026 | -0.30 | 0.24 | 0.98436 | 0.5595 |
| alpha[2] | julianDt | 96 | 5.479 | 5.022 | 3.34 | 7.72 | 0 | 1.001 |
| alpha[3] | julianDtSq | 106 | -1.715 | -1.595 | -2.70 | -0.69 | 0.0067 | 1.0002 |
| alpha0 | NA | 101 | -5.785 | -5.712 | -7.16 | -4.43 | 0 | 1.001 |
| lambda[1] | NA | 8592 | 0.311 | 0.229 | 0.08 | 0.52 | 0 | 1.0009 |
| lambda[2] | NA | 6730 | 1.064 | 0.944 | 0.58 | 1.52 | 0 | 1.001 |
| lambda[3] | NA | 9665 | 0.144 | 0.066 | 0.01 | 0.28 | 0 | 0.9935 |
| lambda[4] | NA | 10000 | 0.000 | err | 0.00 | 0.00 | err | err |
| lambda[5] | NA | 7892 | 0.121 | 0.056 | 0.01 | 0.23 | 0 | 0.9937 |
| N[118] | NA | 8579 | 0.032 | err | 0.00 | 0.00 | err | err |
| N[97] | NA | 0 | 0.000 | err | 0.00 | 0.00 | err | err |
| N[40] | NA | 8481 | 0.100 | err | 0.00 | 0.00 | err | err |
| N[36] | NA | 9554 | 1.166 | err | 1.00 | 2.00 | err | err |
| N[69] | NA | 10000 | 0.033 | err | 0.00 | 0.00 | err | err |
## Warning in cor(X, use = "pairwise.complete.obs"): the standard deviation is zero
## Warning: Removed 50 rows containing missing values (geom_bar).
| param | covariate | iters_ef | mean | mode | hdi_89pct_lower | hdi_89pct_upper | bayes_P | pct.density |
|---|---|---|---|---|---|---|---|---|
| alpha | counts | 7690 | 13.312 | 13.448 | 11.04 | 15.57 | 0 | 1.001 |
| alpha0 | NA | 6710 | -5.721 | -5.525 | -6.71 | -4.67 | 0 | 1.001 |
| lambda[1] | NA | 7367 | 0.916 | 0.667 | 0.24 | 1.59 | 0 | 1.0007 |
| lambda[2] | NA | 9657 | 0.984 | 0.933 | 0.55 | 1.39 | 0 | 1.001 |
| lambda[3] | NA | 4586 | 0.765 | 0.367 | 0.04 | 1.47 | 0 | 0.9928 |
| lambda[4] | NA | 4640 | 0.000 | err | 0.00 | 0.00 | err | err |
| lambda[5] | NA | 3342 | 0.737 | 0.396 | 0.04 | 1.43 | 0 | 0.9921 |
| N[54] | NA | 7143 | 0.738 | 0 | 0.00 | 2.00 | 1 | err |
| N[89] | NA | 10000 | 0.000 | err | 0.00 | 0.00 | err | err |
| N[97] | NA | 10000 | 0.000 | err | 0.00 | 0.00 | err | err |
| N[22] | NA | 0 | 1.000 | err | 1.00 | 1.00 | err | err |
| N[60] | NA | 7190 | 0.727 | 0 | 0.00 | 2.00 | 1 | err |
## Warning in cor(X, use = "pairwise.complete.obs"): the standard deviation is zero
## Warning: Removed 50 rows containing missing values (geom_bar).